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WormBase Tree Display for CDS: CJA05012a

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Name Class

CJA05012aEvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18198
StructureSource_exons1126
8511035
11051220
12631414
14541555
DB_infoDB_remarkcontains similarity to Pfam domain PF00104 (Ligand-binding domain of nuclear hormone receptor); contains similarity to Interpro domains IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
Isoform
VisibleGeneWBGene00124216
Corresponding_transcriptCJA05012a.1
Corresponding_proteinJA42445
Corresponding_oligo_setGPL14145_CJA05012_804-863_0.748_80_C
GPL14145_CJA05012_880-939_0.938_2_A
GPL14145_CJA05012_952-1011_0.932_4_B
Microarray_resultsGPL14145_CJA05012_804-863_0.748_80_C
GPL14145_CJA05012_880-939_0.938_2_A
GPL14145_CJA05012_952-1011_0.932_4_B
RNASeq_FPKMWBls:00000040.049759From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000272.72411From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000381.06067From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
4.55578From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000411.17028From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
1.61733From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
2.95929From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
3.07204From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
3.13785From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
3.63189From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
5.36187From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
5.38718From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
Remarkbased on Augustus prediction Cjap.Contig18198.g27883.t1[100726 mh6]
Methodcurated