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WormBase Tree Display for CDS: CJA05696

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Name Class

CJA05696EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17796
StructureSource_exons188
141304
DB_infoDB_remarkcontains similarity to Pfam domain PF09791 (Oxidoreductase-like protein, N-terminal); contains similarity to Interpro domains IPR019180 (Oxidoreductase-like, N-terminal), IPR039251 (Oxidoreductase-like domain-containing protein 1)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00124900
Corresponding_transcriptCJA05696.1
Corresponding_proteinJA40690
Corresponding_oligo_setGPL14145_CJA05696_43-102_0.629_32_A
GPL14145_CJA05696_138-197_0.965_1_C
GPL14145_CJA05696_190-249_0.958_2_B
Matching_cDNAjaponica_GG647|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA05696_138-197_0.965_1_C
GPL14145_CJA05696_190-249_0.958_2_B
GPL14145_CJA05696_43-102_0.629_32_A
RNASeq_FPKMWBls:000000424.5206From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000278.25745From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003810.6062From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
29.8792From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004112.5572From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
19.3375From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
27.3997From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
31.2316From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
33.1885From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
51.3677From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
55.7066From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
56.5816From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
Remarkbased on Augustus prediction Cjap.Contig17796.g20230.t1[100726 mh6]
Methodcurated