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WormBase Tree Display for CDS: CJA06556

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Name Class

CJA06556EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17904
StructureSource_exons191
300435
490716
36583776
38214018
DB_infoDatabaseTREEFAMTREEFAM_IDTF314435
DB_remarkCJP-MCU-1 protein; contains similarity to Pfam domain PF04678 (Mitochondrial calcium uniporter); contains similarity to Interpro domains IPR006769 (Calcium uniporter protein, C-terminal), IPR039055 (MCU family)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00125760
Corresponding_transcriptCJA06556.1
Corresponding_proteinJA61965
Corresponding_oligo_setGPL14145_CJA06556_288-347_0.779_31_A
GPL14145_CJA06556_483-542_0.678_53_B
GPL14145_CJA06556_651-710_0.901_7_C
Matching_cDNAjaponica_GG7091|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA06556_288-347_0.779_31_A
GPL14145_CJA06556_483-542_0.678_53_B
GPL14145_CJA06556_651-710_0.901_7_C
RNASeq_FPKMWBls:000000417.5975From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002732.7842From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003828.383From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
30.4848From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004153.0643From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
56.3821From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
57.4652From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
57.6765From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
64.1826From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
64.8261From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
66.4629From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
67.3588From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig17904.g21514.t1[100726 mh6]
Methodcurated