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WormBase Tree Display for CDS: CJA06925

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Name Class

CJA06925SMapS_parentSequenceCjap.Contig17375
StructureSource_exons (11)
DB_infoDatabaseTREEFAMTREEFAM_IDTF316105
DB_remarkCJP-PIX-1 protein; contains similarity to Pfam domains PF00621 (RhoGEF domain), PF14604 (Variant SH3 domain), PF16523 (betaPIX coiled coil); contains similarity to Interpro domains IPR000219 (Dbl homology (DH) domain), IPR035899 (Dbl homology (DH) domain superfamily), IPR001452 (SH3 domain), IPR036028 (SH3-like domain superfamily), IPR032409 (Rho guanine nucleotide exchange factor 6/7, coiled-coil domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00126129
Corresponding_transcriptCJA06925.1
Corresponding_proteinJA46755
Corresponding_oligo_setGPL14145_CJA06925_1298-1357_0.901_13_C
GPL14145_CJA06925_1413-1472_0.915_6_B
GPL14145_CJA06925_1687-1746_0.938_3_A
Matching_cDNAjaponica_GG10089|c1_g2_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA06925_1298-1357_0.901_13_C
GPL14145_CJA06925_1413-1472_0.915_6_B
GPL14145_CJA06925_1687-1746_0.938_3_A
RNASeq_FPKMWBls:000000428.6007From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002714.9417From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003810.1427From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
7.14309From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004113.5203From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
21.4603From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
25.8679From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
27.0378From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
2.98043From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
3.88339From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
4.19723From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
4.28551From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
Remarkbased on Augustus prediction Cjap.Contig17375.g16197.t1[100726 mh6]
Methodcurated