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WormBase Tree Display for CDS: CJA06934

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Name Class

CJA06934EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18213
StructureSource_exons1273
331444
498565
612852
9041102
34863699
37484507
DB_infoDatabaseTREEFAMTREEFAM_IDTF314958
DB_remarkcontains similarity to Pfam domain PF07039 (SGF29 tudor-like domain); contains similarity to Interpro domains IPR037802 (SAGA-associated factor 29), IPR010750 (SGF29 tudor-like domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00126138
Corresponding_transcriptCJA06934.1
Corresponding_proteinJA58226
Corresponding_oligo_setGPL14145_CJA06934_817-876_0.873_31_C
GPL14145_CJA06934_993-1052_0.898_20_B
GPL14145_CJA06934_1329-1388_0.893_24_A
Matching_cDNAjaponica_GG16886|c1_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA06934_1329-1388_0.893_24_A
GPL14145_CJA06934_817-876_0.873_31_C
GPL14145_CJA06934_993-1052_0.898_20_B
RNASeq_FPKMWBls:000000429.0181From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000278.20358From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000382.79124From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
3.74095From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004110.0579From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
1.1347From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
1.33798From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
1.3824From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
1.4892From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
22.5268From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
23.7789From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
23.8442From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
Remarkbased on Augustus prediction Cjap.Contig18213.g29024.t1[100726 mh6]
Methodcurated