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WormBase Tree Display for CDS: CJA07169

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Name Class

CJA07169EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18184
StructureSource_exons1136
199265
318490
540655
23032390
28703192
32403398
DB_infoDatabaseTREEFAMTREEFAM_IDTF106367
DB_remarkcontains similarity to Pfam domains PF13793 (N-terminal domain of ribose phosphate pyrophosphokinase), PF14572 (Phosphoribosyl synthetase-associated domain); contains similarity to Interpro domains IPR005946 (Ribose-phosphate pyrophosphokinase), IPR029099 (Ribose-phosphate pyrophosphokinase, N-terminal domain), IPR029057 (Phosphoribosyltransferase-like)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00126373
Corresponding_transcriptCJA07169.1
Corresponding_proteinJA02523
Corresponding_oligo_setGPL14145_CJA07169_259-318_0.886_11_C
GPL14145_CJA07169_662-721_0.811_41_A
GPL14145_CJA07169_951-1010_0.953_1_B
Microarray_resultsGPL14145_CJA07169_259-318_0.886_11_C
GPL14145_CJA07169_662-721_0.811_41_A
GPL14145_CJA07169_951-1010_0.953_1_B
RNASeq_FPKMWBls:000000440.9955From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002758.8196From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003859.4271From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
66.8648From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004129.1275From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
32.1367From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
37.3216From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
40.4784From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
45.5914From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
53.6226From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
54.4729From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
54.5893From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
Remarkbased on Augustus prediction Cjap.Contig18184.g27173.t1[100726 mh6]
Methodcurated