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WormBase Tree Display for CDS: CJA07298

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Name Class

CJA07298EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig4951
StructureSource_exons1165
214957
DB_infoDB_remarkCJP-DPY-3 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00126502
Corresponding_transcriptCJA07298.1
Corresponding_proteinJA42076
Corresponding_oligo_setGPL14145_CJA07298_142-201_0.901_1_A
Matching_cDNAFF115802
japonica_GG10418|c3_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG10418|c3_g1_i2Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA07298_142-201_0.901_1_A
RNASeq_FPKMWBls:0000004243.713From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:0000027174.933From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:0000038206.512From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
214.776From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004112.949From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
15.5237From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
3.37759From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
5.36777From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
5.41956From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
6.59508From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
7.85383From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
7.9264From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
Remarkbased on Augustus prediction Cjap.Contig4951.g3547.t1[100726 mh6]
Methodcurated