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WormBase Tree Display for CDS: CJA07459b

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Name Class

CJA07459bSMapS_parentSequenceCjap.Contig17303
StructureSource_exons (22)
DB_infoDB_remarkCJP-MEC-1 protein; contains similarity to Pfam domains PF00014 (Kunitz/Bovine pancreatic trypsin inhibitor domain), PF07645 (Calcium-binding EGF domain); contains similarity to Interpro domains IPR000742 (EGF-like domain), IPR002223 (Pancreatic trypsin inhibitor Kunitz domain), IPR001881 (EGF-like calcium-binding domain), IPR036880 (Pancreatic trypsin inhibitor Kunitz domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00126663
Corresponding_transcriptCJA07459b.1
Corresponding_proteinJA47954
Corresponding_oligo_setGPL14145_CJA22386_772-831_0.962_1_A
Microarray_resultsGPL14145_CJA22386_772-831_0.962_1_A
RNASeq_FPKMWBls:00000040.011526From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000272.75134From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.00033From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
0.022404From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.000162From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.000176From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.000253From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.030583From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
0.05038From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.056025From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.21087From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.229491From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
Remarkbased on Augustus prediction Cjap.Contig17303.g15615.t1[100726 mh6]
Methodcurated