Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CJA08957

expand all nodes | collapse all nodes | view schema

Name Class

CJA08957EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17556
StructureSource_exons (13)
DB_infoDB_remarkCJP-ACR-8 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR002394 (Nicotinic acetylcholine receptor), IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00128161
Corresponding_transcriptCJA08957.1
Corresponding_proteinJA18493
Corresponding_oligo_setGPL14145_CJA08957_1196-1255_0.881_17_A
GPL14145_CJA08957_1399-1458_0.792_77_C
GPL14145_CJA08957_1524-1583_0.933_2_B
Microarray_resultsGPL14145_CJA08957_1196-1255_0.881_17_A
GPL14145_CJA08957_1399-1458_0.792_77_C
GPL14145_CJA08957_1524-1583_0.933_2_B
RNASeq_FPKMWBls:000000430.1755From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002721.1206From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003811.6254From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
14.4688From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000411.6746From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
1.89404From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
2.12156From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
2.16918From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
2.56008From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
2.66841From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
3.20947From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
3.56352From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
Remarkbased on Augustus prediction Cjap.Contig17556.g17453.t1[100726 mh6]
Methodcurated