Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CJA09057

expand all nodes | collapse all nodes | view schema

Name Class

CJA09057SMapS_parentSequenceCjap.Contig18188
StructureSource_exons (22)
DB_infoDB_remarkCJP-NMY-3 protein; contains similarity to Pfam domain PF00063 (Myosin head (motor domain)); contains similarity to Interpro domains IPR027401 (), IPR008989 (Myosin S1 fragment, N-terminal), IPR036961 (Kinesin motor domain superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001609 (Myosin head, motor domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00128260
Corresponding_transcriptCJA09057.1
Corresponding_proteinJA43081
Corresponding_oligo_setGPL14145_CJA09057_4229-4288_0.932_3_C
GPL14145_CJA09057_4308-4367_0.956_1_A
GPL14145_CJA09057_4323-4382_0.938_2_B
Matching_cDNAjaponica_GG17671|c1_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG17671|c7_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA09057_4229-4288_0.932_3_C
GPL14145_CJA09057_4308-4367_0.956_1_A
GPL14145_CJA09057_4323-4382_0.938_2_B
RNASeq_FPKMWBls:00000041.50498From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002714.4549From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003815.4652From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
17.4624From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.232104From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.263372From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.280638From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.929394From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.963838From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
1.03875From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
1.26929From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
1.82369From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig18188.g27442.t1[100726 mh6]
Methodcurated