WormBase Tree Display for CDS: CJA09335a
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CJA09335a | SMap | S_parent | Sequence | Cjap.Contig16461 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 1159 | ||
1461 | 1589 | ||||
2700 | 2900 | ||||
DB_info | DB_remark | CJP-UNC-33 protein; contains similarity to Pfam domain PF01979 (Amidohydrolase family); contains similarity to Interpro domains IPR032466 (Metal-dependent hydrolase), IPR011059 (Metal-dependent hydrolase, composite domain superfamily), IPR006680 (Amidohydrolase-related) | |||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis japonica | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Isoform | |||||
Start_not_found | 2 | ||||
Visible | Gene | WBGene00128539 | |||
Corresponding_transcript | CJA09335a.1 | ||||
Corresponding_protein | JA56337 | ||||
Corresponding_oligo_set | GPL14145_CJA09335_415-474_0.836_21_C | ||||
GPL14145_CJA09335_1104-1163_0.722_86_A | |||||
GPL14145_CJA09335_1501-1560_0.908_2_B | |||||
Matching_cDNA | japonica_GG5579|c1_g1_i1 | Inferred_automatically | transcript_builder.pl | ||
japonica_GG15652|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14145_CJA09335_1104-1163_0.722_86_A | ||||
GPL14145_CJA09335_1501-1560_0.908_2_B | |||||
GPL14145_CJA09335_415-474_0.836_21_C | |||||
RNASeq_FPKM (4) | |||||
Remark | based on Augustus prediction Cjap.Contig16461.g11603.t2[100726 mh6] | ||||
Method | curated |