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WormBase Tree Display for CDS: CJA09421a

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Name Class

CJA09421aSMapS_parentSequenceCjap.Contig18184
StructureSource_exons (12)
DB_infoDB_remarkcontains similarity to Pfam domain PF00041 (Fibronectin type III domain); contains similarity to Interpro domains IPR003961 (Fibronectin type III), IPR013783 (Immunoglobulin-like fold), IPR036116 (Fibronectin type III superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00128625
Corresponding_transcriptCJA09421a.1
Corresponding_proteinJA39921
Corresponding_oligo_setGPL14145_CJA09421_828-887_0.949_2_B
GPL14145_CJA09421_931-990_0.949_1_C
GPL14145_CJA09421_949-1008_0.625_127_A
Microarray_resultsGPL14145_CJA09421_828-887_0.949_2_B
GPL14145_CJA09421_931-990_0.949_1_C
GPL14145_CJA09421_949-1008_0.625_127_A
RNASeq_FPKMWBls:000000430.0012From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002730.1933From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003822.36From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
26.5984From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000415.38841From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
5.91876From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
5.9452From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
6.08118From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
6.2379From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
6.54354From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
8.73643From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
9.01656From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
Remarkbased on Augustus prediction Cjap.Contig18184.g27267.t1[100726 mh6]
Methodcurated