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WormBase Tree Display for CDS: CJA10760

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Name Class

CJA10760SMapS_parentSequenceCjap.Contig17249
StructureSource_exons1124
15871894
33693854
67796841
DB_infoDatabaseTREEFAMTREEFAM_IDTF105669
DB_remarkCJP-WARS-1 protein; contains similarity to Pfam domain PF00579 (tRNA synthetases class I (W and Y)); contains similarity to Interpro domains IPR002305 (Aminoacyl-tRNA synthetase, class Ic), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR002306 (Tryptophan-tRNA ligase)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00129964
Corresponding_transcriptCJA10760.1
Corresponding_proteinJA64810
Corresponding_oligo_setGPL14145_CJA10760_860-919_0.861_26_B
Microarray_resultsGPL14145_CJA10760_860-919_0.861_26_B
RNASeq_FPKMWBls:000000459.4509From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002781.3888From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003861.9377From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
73.5106From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:0000041107.338From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
34.1242From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
49.362From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
58.603From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
59.1076From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
71.2976From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
89.3232From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
91.3From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
Remarkbased on Augustus prediction Cjap.Contig17249.g15289.t1[100726 mh6]
Methodcurated