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WormBase Tree Display for CDS: CJA10987

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Name Class

CJA10987EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18127
StructureSource_exons176
8241104
11511435
25962919
DB_infoDatabaseTREEFAMTREEFAM_IDTF105394
DB_remarkCJP-CHP-1 protein; contains similarity to Pfam domains PF04968 (CHORD), PF04969 (CS domain); contains similarity to Interpro domains IPR007051 (CHORD domain), IPR039790 (Cysteine and histidine-rich domain-containing protein 1), IPR008978 (HSP20-like chaperone), IPR007052 (CS domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00130191
Corresponding_transcriptCJA10987.1
Corresponding_proteinJA10480
Corresponding_oligo_setGPL14145_CJA10987_399-458_0.899_12_C
GPL14145_CJA10987_656-715_0.944_2_B
GPL14145_CJA10987_769-828_0.745_97_A
Matching_cDNAFF117831Inferred_automaticallytranscript_builder.pl
FF131745Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA10987_399-458_0.899_12_C
GPL14145_CJA10987_656-715_0.944_2_B
GPL14145_CJA10987_769-828_0.745_97_A
RNASeq_FPKMWBls:000000466.6639From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002750.6504From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003842.5793From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
44.4133From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:0000041104.727From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
133.518From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
138.034From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
141.167From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
58.6387From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
89.7767From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
94.9042From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
97.2294From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
Remarkbased on Augustus prediction Cjap.Contig18127.g25507.t1[100726 mh6]
Methodcurated