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WormBase Tree Display for CDS: CJA11562b

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Name Class

CJA11562bEvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18162
StructureSource_exons179
565663
715872
9361009
10561160
12171514
16111816
18661980
20382202
DB_infoDB_remarkCJP-MBR-1 protein; contains similarity to Pfam domain PF05225 (helix-turn-helix, Psq domain); contains similarity to Interpro domains IPR009057 (Homeobox-like domain superfamily), IPR007889 (DNA binding HTH domain, Psq-type)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00130766
Corresponding_transcriptCJA11562b.1
Corresponding_proteinJA16204
Corresponding_oligo_setGPL14145_CJA11562_478-537_0.905_19_A
GPL14145_CJA11562_1108-1167_0.755_98_C
GPL14145_CJA11562_1206-1265_0.940_2_B
Microarray_resultsGPL14145_CJA11562_1108-1167_0.755_98_C
GPL14145_CJA11562_1206-1265_0.940_2_B
GPL14145_CJA11562_478-537_0.905_19_A
RNASeq_FPKMWBls:00000040.447799From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270.000741From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.147811From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
0.801515From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.023677From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
0.352384From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.606431From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.664394From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.736996From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
1.6965From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
1.72722From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
2.07499From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
Remarkbased on Augustus prediction Cjap.Contig18162.g26382.t1[100726 mh6]
Methodcurated