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WormBase Tree Display for CDS: CJA12302

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Name Class

CJA12302EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig16708
StructureSource_exons142
10101066
11321249
12921497
15561811
18671943
30993173
DB_infoDatabaseTREEFAMTREEFAM_IDTF105037
DB_remarkCJP-ISP-1 protein; contains similarity to Pfam domains PF00355 (Rieske [2Fe-2S] domain), PF02921 (Ubiquinol cytochrome reductase transmembrane region); contains similarity to Interpro domains IPR017941 (Rieske [2Fe-2S] iron-sulphur domain), IPR006317 (Ubiquinol-cytochrome c reductase, iron-sulphur subunit), IPR036922 (Rieske [2Fe-2S] iron-sulphur domain superfamily), IPR037008 (Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamily), IPR005805 (Rieske iron-sulphur protein, C-terminal), IPR014349 (Rieske iron-sulphur protein), IPR004192 (Cytochrome b-c1 complex subunit Rieske, transmembrane domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00131506
Corresponding_transcriptCJA12302.1
Corresponding_proteinJA52956
Corresponding_oligo_setGPL14145_CJA12302_315-374_0.615_90_B
GPL14145_CJA12302_491-550_0.882_19_C
GPL14145_CJA12302_579-638_0.957_1_A
Matching_cDNA (13)
Microarray_resultsGPL14145_CJA12302_315-374_0.615_90_B
GPL14145_CJA12302_491-550_0.882_19_C
GPL14145_CJA12302_579-638_0.957_1_A
RNASeq_FPKMWBls:0000004371.379From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:0000027492.271From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:0000038537.147From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
584.247From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:0000041312.101From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
330.287From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
331.368From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
438.333From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
526.271From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
561.367From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
563.56From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
630.389From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig16708.g12422.t1[100726 mh6]
Methodcurated