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WormBase Tree Display for CDS: CJA12483b

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Name Class

CJA12483bSMapS_parentSequenceCjap.Contig3400
StructureSource_exons (26)
DB_infoDB_remarkcontains similarity to Pfam domain PF00041 (Fibronectin type III domain); contains similarity to Interpro domains IPR003961 (Fibronectin type III), IPR013783 (Immunoglobulin-like fold), IPR036179 (Immunoglobulin-like domain superfamily), IPR036116 (Fibronectin type III superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00131687
Corresponding_transcriptCJA12483b.1
Corresponding_proteinJA57412
Corresponding_oligo_setGPL14145_CJA12483_3118-3177_0.838_61_C
GPL14145_CJA12483_3790-3849_0.897_26_B
GPL14145_CJA12483_3802-3861_0.892_32_A
Microarray_resultsGPL14145_CJA12483_3118-3177_0.838_61_C
GPL14145_CJA12483_3790-3849_0.897_26_B
GPL14145_CJA12483_3802-3861_0.892_32_A
RNASeq_FPKMWBls:00000040.000139From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270.02344From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000381.08551From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
3.36506From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000410.000161From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.000777From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.000813From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.00242From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.003305From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.283307From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.913227From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
1.12435From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
Remarkbased on Augustus prediction Cjap.Contig3400.g2476.t2[100726 mh6]
Methodcurated