Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CJA12551a

expand all nodes | collapse all nodes | view schema

Name Class

CJA12551aEvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17562
StructureSource_exons1163
662954
15812166
22142296
DB_infoDB_remarkCJP-BRF-1 protein; contains similarity to Pfam domains PF00382 (Transcription factor TFIIB repeat), PF08271 (TFIIB zinc-binding); contains similarity to Interpro domains IPR029529 (), IPR000812 (Transcription factor TFIIB), IPR013763 (Cyclin-like domain), IPR036915 (Cyclin-like superfamily), IPR013150 (Transcription factor TFIIB, cyclin-like domain), IPR013137 (Zinc finger, TFIIB-type)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00131755
Corresponding_transcriptCJA12551a.1
Corresponding_proteinJA54273
Corresponding_oligo_setGPL14145_CJA12551_627-686_0.744_108_C
GPL14145_CJA12551_757-816_0.915_5_A
GPL14145_CJA12551_806-865_0.827_58_B
Matching_cDNAjaponica_GG12646|c5_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA12551_627-686_0.744_108_C
GPL14145_CJA12551_757-816_0.915_5_A
GPL14145_CJA12551_806-865_0.827_58_B
RNASeq_FPKMWBls:000000424.5398From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002711.3472From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000386.1047From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
9.78062From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004117.4705From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
19.5201From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
21.1636From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
21.7306From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
2.4689From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
4.61549From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
5.10908From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
5.75519From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
Remarkbased on Augustus prediction Cjap.Contig17562.g17610.t1[100726 mh6]
Methodcurated