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WormBase Tree Display for CDS: CJA12650a

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Name Class

CJA12650aSMapS_parentSequenceCjap.Contig17532
StructureSource_exons1166
14681684
17861978
20302161
43574507
46564852
DB_infoDatabaseTREEFAMTREEFAM_IDTF315163
DB_remarkCJP-CEE-1 protein; contains similarity to Pfam domain PF04190 (Golgi to ER traffic protein 4); contains similarity to Interpro domains IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR007317 (Golgi to ER traffic protein 4)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00131854
Corresponding_transcriptCJA12650a.1
Corresponding_proteinJA64185
Corresponding_oligo_setGPL14145_CJA12650_966-1025_0.920_4_C
GPL14145_CJA12650_1062-1121_0.883_13_B
GPL14145_CJA12650_1237-1296_0.566_168_A
Matching_cDNAFF114119Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA12650_1062-1121_0.883_13_B
GPL14145_CJA12650_1237-1296_0.566_168_A
GPL14145_CJA12650_966-1025_0.920_4_C
RNASeq_FPKMWBls:000000435.9425From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002736.9537From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003843.1821From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
44.201From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004130.1005From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
41.09From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
48.6659From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
50.1656From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
50.1977From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
62.8749From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
63.7314From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
66.3661From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
Remarkbased on Augustus prediction Cjap.Contig17532.g17215.t2[100726 mh6]
Methodcurated