WormBase Tree Display for CDS: CJA13357
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CJA13357 | Evidence | Inferred_automatically | make_isoforms.pl | |
---|---|---|---|---|
SMap | S_parent | Sequence | Cjap.Contig17232 | |
Structure | Source_exons | 1 | 219 | |
261 | 585 | |||
643 | 827 | |||
1318 | 1802 | |||
3417 | 3582 | |||
DB_info | DB_remark | CJP-UNC-122 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF02191 (Olfactomedin-like domain); contains similarity to Interpro domains IPR003112 (Olfactomedin-like domain), IPR008160 (Collagen triple helix repeat) | ||
Origin | From_laboratory | RW | ||
Species | Caenorhabditis japonica | |||
Properties | Coding | CDS | ||
Prediction_status | Confirmed | |||
Visible | Gene | WBGene00132561 | ||
Corresponding_transcript | CJA13357.1 | |||
Corresponding_protein | JA68351 | |||
Corresponding_oligo_set | GPL14145_CJA13357_544-603_0.869_24_C | |||
GPL14145_CJA13357_976-1035_0.874_21_B | ||||
GPL14145_CJA13357_1191-1250_0.707_129_A | ||||
Matching_cDNA (2) | ||||
Microarray_results | GPL14145_CJA13357_1191-1250_0.707_129_A | |||
GPL14145_CJA13357_544-603_0.869_24_C | ||||
GPL14145_CJA13357_976-1035_0.874_21_B | ||||
RNASeq_FPKM (4) | ||||
Remark | based on Augustus prediction Cjap.Contig17232.g15047.t1[100726 mh6] | |||
[20120529 po]modified a splice to remove an internal stop | ||||
Method | curated |