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WormBase Tree Display for CDS: CJA13900

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Name Class

CJA13900EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig10450
StructureSource_exons1234
16421818
18622029
36063770
38143942
DB_infoDatabaseTREEFAMTREEFAM_IDTF313720
DB_remarkCJP-MTRF-1L protein; contains similarity to Pfam domains PF00472 (RF-1 domain), PF03462 (PCRF domain); contains similarity to Interpro domains IPR005139 (Peptide chain release factor), IPR000352 (Peptide chain release factor class I)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00133104
Corresponding_transcriptCJA13900.1
Corresponding_proteinJA41346
Corresponding_oligo_setGPL14145_CJA13900_836-895_0.916_1_A
Matching_cDNAFF121258Inferred_automaticallytranscript_builder.pl
FF130309
Microarray_resultsGPL14145_CJA13900_836-895_0.916_1_A
RNASeq_FPKMWBls:00000042.53587From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000276.83418From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000386.25734From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
8.82922From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004115.9493From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
18.3608From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
19.7883From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
4.49911From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
7.64977From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
8.49352From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
9.73559From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
9.92768From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
Remarkbased on Augustus prediction Cjap.Contig10450.g7002.t1[100726 mh6]
Methodcurated