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WormBase Tree Display for CDS: CJA13926

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Name Class

CJA13926EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18089
StructureSource_exons172
19622181
22372408
24552560
DB_infoDB_remarkcontains similarity to Pfam domain PF01496 (V-type ATPase 116kDa subunit family); contains similarity to Interpro domain IPR002490 (V-type ATPase, V0 complex, 116kDa subunit family)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00133130
Corresponding_transcriptCJA13926.1
Corresponding_proteinJA46500
Corresponding_oligo_setGPL14145_CJA13291_1940-1999_0.934_2_C
GPL14145_CJA13291_2304-2363_0.475_360_B
Matching_cDNAFF123977Inferred_automaticallytranscript_builder.pl
japonica_GG19218|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA13291_1940-1999_0.934_2_C
GPL14145_CJA13291_2304-2363_0.475_360_B
RNASeq_FPKMWBls:000000459.8081From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002748.1484From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003827.2717From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
31.4518From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004124.5866From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
26.729From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
29.6739From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
31.2964From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
33.3563From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
33.9439From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
35.7172From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
37.6674From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
Remarkbased on Augustus prediction Cjap.Contig18089.g24565.t1[100726 mh6]
Methodcurated