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WormBase Tree Display for CDS: CJA14234b

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Name Class

CJA14234bSMapS_parentSequenceCjap.Contig17724
StructureSource_exons (15)
DB_infoDB_remarkCJP-MKS-5 protein; contains similarity to Pfam domain PF11618 (First C2 domain of RPGR-interacting protein 1); contains similarity to Interpro domains IPR021656 (RPGR-interacting protein 1, first C2 domain), IPR031139 (RPGRIP1 family), IPR035892 (C2 domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00133438
Corresponding_transcriptCJA14234b.1
Corresponding_proteinJA61078
Corresponding_oligo_setGPL14145_CJA14234_3771-3830_0.822_111_B
GPL14145_CJA14234_4235-4294_0.926_6_C
GPL14145_CJA14234_4381-4440_0.941_3_A
Microarray_resultsGPL14145_CJA14234_3771-3830_0.822_111_B
GPL14145_CJA14234_4235-4294_0.926_6_C
GPL14145_CJA14234_4381-4440_0.941_3_A
RNASeq_FPKMWBls:00000043.73145From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000273.08795From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.753688From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
1.34997From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.003214From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.035766From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.216244From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.538691From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
1.8e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
1.9e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
8e-06From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
8.6e-05From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
Remarkbased on Augustus prediction Cjap.Contig17724.g19764.t1[100726 mh6]
Methodcurated