WormBase Tree Display for CDS: CJA14444
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CJA14444 | Evidence | Inferred_automatically | make_isoforms.pl | ||
---|---|---|---|---|---|
SMap | S_parent | Sequence | Cjap.Contig3102 | ||
Structure | Source_exons | 1 | 870 | ||
925 | 1910 | ||||
1970 | 2237 | ||||
DB_info | Database | TREEFAM | TREEFAM_ID | TF300686 | |
DB_remark | CJP-HSP-90 protein; contains similarity to Pfam domains PF00183 (Hsp90 protein), PF02518 (Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase); contains similarity to Interpro domains IPR001404 (Heat shock protein Hsp90 family), IPR020575 (Heat shock protein Hsp90, N-terminal), IPR020568 (Ribosomal protein uS5 domain 2-type superfamily), IPR036890 (Histidine kinase/HSP90-like ATPase superfamily), IPR003594 (Histidine kinase/HSP90-like ATPase), IPR037196 (HSP90, C-terminal domain) | ||||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis japonica | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Visible | Gene | WBGene00133648 | |||
Corresponding_transcript | CJA14444.1 | ||||
Corresponding_protein | JA56130 | ||||
Corresponding_oligo_set | GPL14145_CJA14444_394-453_0.818_24_B | ||||
GPL14145_CJA14444_699-758_0.742_49_C | |||||
GPL14145_CJA14444_890-949_0.783_32_A | |||||
Matching_cDNA (31) | |||||
Microarray_results | GPL14145_CJA14444_394-453_0.818_24_B | ||||
GPL14145_CJA14444_699-758_0.742_49_C | |||||
GPL14145_CJA14444_890-949_0.783_32_A | |||||
RNASeq_FPKM (4) | |||||
Remark | based on Augustus prediction Cjap.Contig3102.g2271.t1[100726 mh6] | ||||
[150407 mh6] most likely incomplete at the N-terminus | Curator_confirmed | WBPerson4055 | |||
Method | curated |