WormBase Tree Display for CDS: CJA15354

CJA15354 Evidence: Inferred_automatically: make_isoforms.pl
  SMap: S_parent: Sequence: Cjap.Contig18062
  Structure: Source_exons: 1 46
      328 400
      2746 3763
      5793 6368
      6623 7201
  DB_info: Database: TREEFAM TREEFAM_ID TF105969
    DB_remark: CJP-ENPL-1 protein; contains similarity to Pfam domains PF00183 (Hsp90 protein), PF02518 (Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase); contains similarity to Interpro domains IPR001404 (Heat shock protein Hsp90 family), IPR020575 (Heat shock protein Hsp90, N-terminal), IPR020568 (Ribosomal protein uS5 domain 2-type superfamily), IPR036890 (Histidine kinase/HSP90-like ATPase superfamily), IPR003594 (Histidine kinase/HSP90-like ATPase), IPR037196 (HSP90, C-terminal domain)
  Origin: From_laboratory: RW
    Species: Caenorhabditis japonica
  Properties: Coding: CDS
      Prediction_status: Confirmed
  Visible: Gene: WBGene00134558
    Corresponding_transcript: CJA15354.1
    Corresponding_protein: JA52332
    Corresponding_oligo_set: GPL14145_CJA15354_1228-1287_0.614_228_B
      GPL14145_CJA15354_1341-1400_0.876_18_C
      GPL14145_CJA15354_1431-1490_0.905_2_A
    Matching_cDNA: FD513436 Inferred_automatically: transcript_builder.pl
      FF112890 Inferred_automatically: transcript_builder.pl
      FF114036 Inferred_automatically: transcript_builder.pl
      FF122781 Inferred_automatically: transcript_builder.pl
      FF124487 Inferred_automatically: transcript_builder.pl
      japonica_GG9744|c9_g2_i1 Inferred_automatically: transcript_builder.pl
      japonica_GG9744|c9_g3_i1 Inferred_automatically: transcript_builder.pl
      japonica_GG9744|c9_g4_i1 Inferred_automatically: transcript_builder.pl
    Microarray_results: GPL14145_CJA15354_1228-1287_0.614_228_B
      GPL14145_CJA15354_1341-1400_0.876_18_C
      GPL14145_CJA15354_1431-1490_0.905_2_A
    RNASeq_FPKM: WBls:0000004 535.543 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 483.092 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 276.119 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        299.087 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 155.812 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        175.477 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        175.924 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        185.935 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        186.185 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        190.315 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        274.361 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        318.068 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
    Remark: based on Augustus prediction Cjap.Contig18062.g24076.t1[100726 mh6]
  Method: curated