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WormBase Tree Display for CDS: CJA16181b

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Name Class

CJA16181bSMapS_parentSequenceCjap.Contig18041
StructureSource_exons (13)
DB_infoDB_remarkCJP-IFP-1 protein; contains similarity to Pfam domain PF00038 (Intermediate filament protein); contains similarity to Interpro domains IPR039008 (Intermediate filament, rod domain), IPR042180 (), IPR036415 (Lamin tail domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
Isoform
VisibleGeneWBGene00135385
Corresponding_transcriptCJA16181b.1
Corresponding_proteinJA66694
Corresponding_oligo_setGPL14145_CJA16181_676-735_0.776_122_B
GPL14145_CJA16181_954-1013_0.337_487_A
GPL14145_CJA16181_2430-2489_0.928_1_C
Matching_cDNAjaponica_GG16926|c0_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG16926|c0_g3_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA16181_2430-2489_0.928_1_C
GPL14145_CJA16181_676-735_0.776_122_B
GPL14145_CJA16181_954-1013_0.337_487_A
RNASeq_FPKMWBls:000000451.6282From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002710.8242From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003822.0371From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
24.409From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000411.71922From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
2.05233From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
2.19972From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
2.33639From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
2.61859From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
2.81883From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
3.53272From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
4.70053From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig18041.g23629.t1[100726 mh6]
Methodcurated