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WormBase Tree Display for CDS: CJA16313

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Name Class

CJA16313EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig2995
StructureSource_exons1114
523731
8971011
10841602
16481761
DB_infoDatabaseTREEFAMTREEFAM_IDTF315248
DB_remarkCJP-APY-1 protein; contains similarity to Pfam domain PF06079 (Apyrase); contains similarity to Interpro domains IPR009283 (Apyrase), IPR036258 (Apyrase superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00135517
Corresponding_transcriptCJA16313.1
Corresponding_proteinJA68522
Corresponding_oligo_setGPL14145_CJA16313_719-778_0.933_1_C
GPL14145_CJA16313_936-995_0.745_87_B
GPL14145_CJA16313_1054-1113_0.896_18_A
Matching_cDNAFF111998Inferred_automaticallytranscript_builder.pl
FF112254Inferred_automaticallytranscript_builder.pl
FF114446Inferred_automaticallytranscript_builder.pl
FF116731Inferred_automaticallytranscript_builder.pl
FF129766Inferred_automaticallytranscript_builder.pl
FF130237Inferred_automaticallytranscript_builder.pl
FF134018Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA16313_1054-1113_0.896_18_A
GPL14145_CJA16313_719-778_0.933_1_C
GPL14145_CJA16313_936-995_0.745_87_B
RNASeq_FPKMWBls:000000465.9371From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:0000027179.429From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:0000038211.38From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
219.032From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:0000041106.046From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
106.087From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
122.597From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
137.676From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
143.677From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
152.25From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
48.7912From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
77.8536From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig2995.g2134.t1[100726 mh6]
[131022 gw3] Removed the first exon based on the RNASeq data.Curator_confirmedWBPerson4025
From_analysisRNASeq_Hillier_japonica
Methodcurated