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WormBase Tree Display for CDS: CJA16442a

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Name Class

CJA16442aSMapS_parentSequenceCjap.Contig16299
StructureSource_exons1280
326502
5492512
25652645
26872806
28483237
DB_infoDB_remarkcontains similarity to Pfam domain PF00084 (Sushi repeat (SCR repeat)); contains similarity to Interpro domains IPR035976 (Sushi/SCR/CCP superfamily), IPR000436 (Sushi/SCR/CCP domain), IPR042312 (Uncharacterized protein F26C11.3-like)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPredicted
Isoform
VisibleGeneWBGene00135645
Corresponding_transcriptCJA16442a.1
Corresponding_proteinJA66947
Corresponding_oligo_setGPL14145_CJA16442_2522-2581_0.932_1_A
Microarray_resultsGPL14145_CJA16442_2522-2581_0.932_1_A
RNASeq_FPKMWBls:00000040From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270.000409From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.000113From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.00014From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.051806From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.152242From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.260487From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
0From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
Remarkbased on Augustus prediction Cjap.Contig16299.g10993.t1[100726 mh6]
Methodcurated