Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CJA16901

expand all nodes | collapse all nodes | view schema

Name Class

CJA16901EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig7087
StructureSource_exons1612
6581075
12461511
DB_infoDatabaseTREEFAMTREEFAM_IDTF300440
DB_remarkCJP-CGH-1 protein; contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase), PF00271 (Helicase conserved C-terminal domain); contains similarity to Interpro domains IPR011545 (DEAD/DEAH box helicase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR001650 (Helicase, C-terminal domain-like)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00136106
Corresponding_transcriptCJA16901.1
Corresponding_proteinJA32356
Corresponding_oligo_setGPL14145_CJA16901_810-869_0.930_5_C
GPL14145_CJA16901_920-979_0.943_1_A
GPL14145_CJA16901_931-990_0.942_2_B
Matching_cDNAFF119090
FF119389Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA16901_810-869_0.930_5_C
GPL14145_CJA16901_920-979_0.943_1_A
GPL14145_CJA16901_931-990_0.942_2_B
RNASeq_FPKMWBls:0000004113.224From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002743.7837From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003894.3754From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
95.121From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000411306.59From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
136.182From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
1417.31From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
1470.66From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
148.581From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
163.578From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
164.469From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
979.633From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
Remarkbased on Augustus prediction Cjap.Contig7087.g5033.t1[100726 mh6]
Methodcurated