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WormBase Tree Display for CDS: CJA17761

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Name Class

CJA17761SMapS_parentSequenceCjap.Contig2903
StructureSource_exons1901
38984541
83738461
DB_infoDB_remarkCJP-UTP-20.2 protein; contains similarity to Pfam domain PF07539 (U3 small nucleolar RNA-associated protein 20, N-terminal); contains similarity to Interpro domains IPR011430 (U3 small nucleolar RNA-associated protein 20, N-terminal), IPR016024 (Armadillo-type fold)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Start_not_found3
VisibleGeneWBGene00136966
Corresponding_transcriptCJA17761.1
Corresponding_proteinJA58201
Corresponding_oligo_setGPL14145_CJA17761_1299-1358_0.945_1_A
Matching_cDNAjaponica_GG11471|c2_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA17761_1299-1358_0.945_1_A
RNASeq_FPKMWBls:000000415.7901From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002717.2685From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003815.4491From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
16.6006From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004110.6583From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
1.78944From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
2.10547From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
2.39049From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
27.715From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
7.05436From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
8.8275From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
9.24664From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
Remarkbased on Augustus prediction Cjap.Contig2903.g2062.t1[100726 mh6]
Methodcurated