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WormBase Tree Display for CDS: CJA17780

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Name Class

CJA17780EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17920
StructureSource_exons132
98767
20292145
DB_infoDatabaseTREEFAMTREEFAM_IDTF315028
DB_remarkCJP-UNG-1 protein; contains similarity to Pfam domain PF03167 (Uracil DNA glycosylase superfamily); contains similarity to Interpro domains IPR036895 (Uracil-DNA glycosylase-like domain superfamily), IPR005122 (Uracil-DNA glycosylase-like), IPR002043 (Uracil-DNA glycosylase family 1)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00136985
Corresponding_transcriptCJA17780.1
Corresponding_proteinJA62835
Corresponding_oligo_setGPL14145_CJA17780_369-428_0.916_10_C
GPL14145_CJA17780_659-718_0.944_2_B
GPL14145_CJA17780_784-843_0.816_54_A
Microarray_resultsGPL14145_CJA17780_369-428_0.916_10_C
GPL14145_CJA17780_659-718_0.944_2_B
GPL14145_CJA17780_784-843_0.816_54_A
RNASeq_FPKMWBls:000000431.9636From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000279.51212From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003811.9706From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
9.93206From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004110.6215From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
3.38738From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
40.7596From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
5.85786From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
74.3703From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
8.85246From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
89.2755From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
92.6979From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
Remarkbased on Augustus prediction Cjap.Contig17920.g21795.t1[100726 mh6]
Methodcurated