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WormBase Tree Display for CDS: CJA19181

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Name Class

CJA19181EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18262
StructureSource_exons1948
10101252
DB_infoDatabaseTREEFAMTREEFAM_IDTF338438
DB_remarkCJP-CRT-1 protein; contains similarity to Pfam domain PF00262 (Calreticulin family); contains similarity to Interpro domains IPR013320 (Concanavalin A-like lectin/glucanase domain superfamily), IPR009033 (Calreticulin/calnexin, P domain superfamily), IPR009169 (Calreticulin), IPR001580 (Calreticulin/calnexin)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00138385
Corresponding_transcriptCJA19181.1
Corresponding_proteinJA44819
Corresponding_oligo_setGPL14145_CJA19181_658-717_0.913_5_C
GPL14145_CJA19181_813-872_0.818_32_B
GPL14145_CJA19181_1034-1093_0.957_1_A
Matching_cDNA (14)
Microarray_resultsGPL14145_CJA19181_1034-1093_0.957_1_A
GPL14145_CJA19181_658-717_0.913_5_C
GPL14145_CJA19181_813-872_0.818_32_B
RNASeq_FPKMWBls:00000041555.15From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000271672.87From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000381398.82From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
1419.59From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000411155.83From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
1174.9From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
1286.11From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
1435.11From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
1677.5From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
1688From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
1732.45From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
830.506From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
Remarkbased on Augustus prediction Cjap.Contig18262.g29709.t1[100726 mh6]
Methodcurated