WormBase Tree Display for CDS: CJA24831a
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CJA24831a | SMap | S_parent | Sequence | Cjap.Contig17617 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 114 | ||
254 | 1009 | ||||
2560 | 2786 | ||||
3707 | 3716 | ||||
DB_info | Database | TREEFAM | TREEFAM_ID | TF351794 | |
DB_remark | CJP-UNC-129 protein; contains similarity to Pfam domain PF00019 (Transforming growth factor beta like domain); contains similarity to Interpro domains IPR015615 (Transforming growth factor-beta-related), IPR029034 (Cystine-knot cytokine), IPR001839 (Transforming growth factor-beta, C-terminal) | ||||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis japonica | ||||
Properties | Coding | CDS | |||
Prediction_status | Partially_confirmed | ||||
Isoform | |||||
Visible | Gene | WBGene00180403 | |||
Corresponding_transcript | CJA24831a.1 | ||||
Corresponding_protein | JA62362 | ||||
Corresponding_oligo_set | GPL14145_CJA04543_232-291_0.768_97_B | ||||
GPL14145_CJA04543_536-595_0.900_30_C | |||||
GPL14145_CJA24831_110-169_0.954_1_A | |||||
Matching_cDNA | japonica_GG13611|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||
Microarray_results | GPL14145_CJA04543_232-291_0.768_97_B | ||||
GPL14145_CJA04543_536-595_0.900_30_C | |||||
GPL14145_CJA24831_110-169_0.954_1_A | |||||
RNASeq_FPKM (4) | |||||
Remark | based on Augustus prediction Cjap.Contig17617.g18695.t1[100726 mh6] | ||||
Method | curated |