WormBase Tree Display for CDS: CJA35746
expand all nodes | collapse all nodes | view schema
CJA35746 | Evidence | Inferred_automatically | make_isoforms.pl | ||
---|---|---|---|---|---|
SMap | S_parent | Sequence | Cjap.Contig16807 | ||
Structure | Source_exons | 1 | 102 | ||
309 | 483 | ||||
3816 | 4182 | ||||
4250 | 4909 | ||||
5423 | 5444 | ||||
DB_info | DB_remark | CJP-UNC-5 protein; contains similarity to Pfam domains PF00090 (Thrombospondin type 1 domain), PF13895 (Immunoglobulin domain); contains similarity to Interpro domains IPR036383 (Thrombospondin type-1 (TSP1) repeat superfamily), IPR007110 (Immunoglobulin-like domain), IPR003599 (Immunoglobulin subtype), IPR003598 (Immunoglobulin subtype 2), IPR000884 (Thrombospondin type-1 (TSP1) repeat), IPR013783 (Immunoglobulin-like fold), IPR036179 (Immunoglobulin-like domain superfamily), IPR037936 (Netrin receptor UNC5) | |||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis japonica | ||||
Properties | Coding | CDS | |||
Prediction_status | Partially_confirmed | ||||
Visible | Gene | WBGene00211593 | |||
Corresponding_transcript | CJA35746.1 | ||||
Corresponding_protein | JA55552 | ||||
Matching_cDNA | FF122066 | Inferred_automatically | transcript_builder.pl | ||
RNASeq_FPKM (4) | |||||
Remark | based on Augustus prediction Cjap.Contig16807.g12778.t1[100726 mh6] | ||||
Method | curated |