WormBase Tree Display for CDS: CRE25611
expand all nodes | collapse all nodes | view schema
CRE25611 | SMap | S_parent | Sequence | Crem_Contig7 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 117 | ||
179 | 244 | ||||
344 | 541 | ||||
835 | 1511 | ||||
1615 | 1791 | ||||
1843 | 1936 | ||||
1988 | 2143 | ||||
2195 | 2661 | ||||
2716 | 2799 | ||||
3709 | 3874 | ||||
DB_info | Database | TREEFAM | TREEFAM_ID | TF319048 | |
DB_remark | CRE-TAX-4 protein; contains similarity to Pfam domains PF00027 (Cyclic nucleotide-binding domain), PF00520 (Ion transport protein), PF16526 (C-terminal leucine zipper domain of cyclic nucleotide-gated channels); contains similarity to Interpro domains IPR032406 (Cyclic nucleotide-gated channel, C-terminal leucine zipper domain), IPR018490 (Cyclic nucleotide-binding domain superfamily), IPR000595 (Cyclic nucleotide-binding domain), IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR005821 (Ion transport domain), IPR014710 (RmlC-like jelly roll fold) | ||||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis remanei | ||||
Properties | Coding | CDS | |||
Prediction_status | Predicted | ||||
Visible | Gene | WBGene00055150 | |||
Corresponding_transcript | CRE25611.1 | ||||
Corresponding_protein | RP03418 | ||||
Corresponding_oligo_set | GPL14146_CRE25611_1589-1648_0.917_11_B | ||||
GPL14146_CRE25611_1800-1859_0.829_67_C | |||||
GPL14146_CRE25611_1985-2044_0.900_19_A | |||||
Microarray_results | GPL14146_CRE25611_1589-1648_0.917_11_B | ||||
GPL14146_CRE25611_1800-1859_0.829_67_C | |||||
GPL14146_CRE25611_1985-2044_0.900_19_A | |||||
RNASeq_FPKM (6) | |||||
Method | curated |