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WormBase Tree Display for CDS: CRE27199

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Name Class

CRE27199SMapS_parentSequenceCrem_Contig5
StructureSource_exons1360
4681073
11181225
DB_infoDatabaseTREEFAMTREEFAM_IDTF350445
DB_remarkCRE-PQN-51 protein; contains similarity to Pfam domain PF03153 (Transcription factor IIA, alpha/beta subunit); contains similarity to Interpro domains IPR009088 (Transcription factor IIA, beta-barrel), IPR004855 (Transcription factor IIA, alpha/beta subunit)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis remanei
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00052699
Corresponding_transcriptCRE27199.1
CRE27199.2
Corresponding_proteinRP20923
Corresponding_oligo_setGPL14146_CRE27199_810-869_0.950_1_B
GPL14146_CRE27199_838-897_0.948_2_C
GPL14146_CRE27199_975-1034_0.893_34_A
Matching_cDNADR777431Inferred_automaticallytranscript_builder.pl
DR776449Inferred_automaticallytranscript_builder.pl
DR778370Inferred_automaticallytranscript_builder.pl
DR778718Inferred_automaticallytranscript_builder.pl
DR781768Inferred_automaticallytranscript_builder.pl
DR781405Inferred_automaticallytranscript_builder.pl
DR780496Inferred_automaticallytranscript_builder.pl
DR781088Inferred_automaticallytranscript_builder.pl
DR409438Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14146_CRE27199_810-869_0.950_1_B
GPL14146_CRE27199_838-897_0.948_2_C
GPL14146_CRE27199_975-1034_0.893_34_A
RNASeq_FPKMWBls:000000469.4363From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
70.6899From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
WBls:0000024 (54)
WBls:000002731.0989From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
44.9516From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
53.0948From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
9.42776From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:000003819.9292From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
59.5412From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
68.7112From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
WBls:0000041111.039From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
114.55From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
115.059From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
41.5492From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
49.4729From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
49.9003From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
WBls:000006327.2171From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
40.1485From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
42.0525From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
44.2804From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
47.7741From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
51.8002From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
53.5232From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
53.933From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
54.1775From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
61.7852From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
Methodcurated