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WormBase Tree Display for CDS: CRE27285

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Name Class

CRE27285SMapS_parentSequenceCrem_Contig5
StructureSource_exons (48)
DB_infoDatabaseTREEFAMTREEFAM_IDTF315244
DB_remarkCRE-UNC-68 protein; contains similarity to Pfam domains PF00520 (Ion transport protein), PF00622 (SPRY domain), PF01365 (RIH domain), PF02026 (RyR domain), PF02815 (MIR domain), PF06459 (Ryanodine Receptor TM 4-6), PF08454 (RyR and IP3R Homology associated), PF08709 (Inositol 1,4,5-trisphosphate/ryanodine receptor), PF13499 (EF-hand domain pair); contains similarity to Interpro domains IPR014821 (Inositol 1,4,5-trisphosphate/ryanodine receptor), IPR002048 (EF-hand domain), IPR013320 (Concanavalin A-like lectin/glucanase domain superfamily), IPR036300 (Mir domain superfamily), IPR009460 (Ryanodine Receptor TM 4-6), IPR003032 (Ryanodine receptor Ryr), IPR013662 (RyR/IP3R Homology associated domain), IPR003877 (SPRY domain), IPR011992 (EF-hand domain pair), IPR035910 (RyR/IP3 receptor binding core, RIH domain superfamily), IPR005821 (Ion transport domain), IPR015925 (Ryanodine/Inositol 1,4,5-trisphosphate receptor), IPR000699 (RIH domain), IPR013333 (Ryanodine receptor), IPR016093 (MIR motif)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis remanei
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00052257
Corresponding_transcriptCRE27285.1
Corresponding_proteinRP50199
Corresponding_oligo_setGPL14146_CRE27285_15332-15391_0.919_4_B
GPL14146_CRE27285_15375-15434_0.917_5_C
GPL14146_CRE27285_15488-15547_0.943_1_A
Matching_cDNADY527070Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14146_CRE27285_15332-15391_0.919_4_B
GPL14146_CRE27285_15375-15434_0.917_5_C
GPL14146_CRE27285_15488-15547_0.943_1_A
RNASeq_FPKMWBls:00000042.27609From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
2.72599From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (54)
WBls:00000272.37118From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
26.5625From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
27.7601From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
28.9786From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
WBls:000003812.8538From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
14.5559From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
4.86912From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:00000412.34314From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
3.34016From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
3.7548From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
6.12154From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
6.86324From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
7.46833From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
WBls:000006311.8204From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
13.5711From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
14.0073From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
14.0321From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
14.9898From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
7.04025From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
7.10705From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
7.49842From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
7.81267From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
9.21713From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
Methodcurated