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WormBase Tree Display for CDS: CRE27332

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Name Class

CRE27332SMapS_parentSequenceCrem_Contig5
StructureSource_exons1102
147353
440866
9101526
16692015
20602820
28673540
35973839
40984247
DB_infoDatabaseTREEFAMTREEFAM_IDTF300535
DB_remarkCRE-PYC-1 protein; contains similarity to Pfam domains PF00289 (Biotin carboxylase, N-terminal domain), PF00364 (Biotin-requiring enzyme), PF00682 (HMGL-like), PF02436 (Conserved carboxylase domain), PF02785 (Biotin carboxylase C-terminal domain), PF02786 (Carbamoyl-phosphate synthase L chain, ATP binding domain); contains similarity to Interpro domains IPR005930 (Pyruvate carboxylase), IPR000089 (Biotin/lipoyl attachment), IPR000891 (Pyruvate carboxyltransferase), IPR005482 (Biotin carboxylase, C-terminal), IPR003379 (Carboxylase, conserved domain), IPR011053 (Single hybrid motif), IPR013785 (Aldolase-type TIM barrel), IPR005481 (Biotin carboxylase-like, N-terminal domain), IPR016185 (Pre-ATP-grasp domain superfamily), IPR005479 (Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain), IPR011054 (Rudiment single hybrid motif)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis remanei
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00052363
Corresponding_transcriptCRE27332.1
Corresponding_proteinRP18670
Corresponding_oligo_setGPL14146_CRE27332_2980-3039_0.920_14_C
GPL14146_CRE27332_3255-3314_0.928_5_B
GPL14146_CRE27332_3453-3512_0.950_1_A
Matching_cDNADR777348Inferred_automaticallytranscript_builder.pl
DY529045Inferred_automaticallytranscript_builder.pl
DR408512Inferred_automaticallytranscript_builder.pl
DT935082Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14146_CRE27332_2980-3039_0.920_14_C
GPL14146_CRE27332_3255-3314_0.928_5_B
GPL14146_CRE27332_3453-3512_0.950_1_A
RNASeq_FPKMWBls:000000416.6192From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
17.2704From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
WBls:0000024 (54)
WBls:0000027125.458From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
145.063From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
150.778From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
51.2554From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:0000038148.743From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
151.243From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
45.5201From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:0000041109.243From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
206.798From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
222.597From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
225.415From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
87.8469From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
96.5863From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
WBls:0000063130.689From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
131.839From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
132.238From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
134.651From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
136.41From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
219.324From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
223.62From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
234.44From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
239.46From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
239.72From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
Methodcurated