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WormBase Tree Display for CDS: CRE27471

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Name Class

CRE27471EvidenceCurator_confirmedWBPerson1983
SMapS_parentSequenceCrem_Contig5
StructureSource_exons1138
216509
DB_infoDB_remarkcontains similarity to Pfam domain PF00011 (Hsp20/alpha crystallin family); contains similarity to Interpro domains IPR031107 (Small heat shock protein), IPR002068 (Alpha crystallin/Hsp20 domain), IPR008978 (HSP20-like chaperone), IPR001436 (Alpha crystallin/Small heat shock protein, animal type)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis remanei
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00052625
Corresponding_transcriptCRE27471.1
Corresponding_proteinRP10905
Corresponding_oligo_setGPL14146_CRE27471_171-230_0.861_22_B
GPL14146_CRE27471_318-377_0.947_2_C
GPL14146_CRE27471_364-423_0.967_1_A
Matching_cDNADY526056Inferred_automaticallytranscript_builder.pl
DY525727Inferred_automaticallytranscript_builder.pl
DT935700Inferred_automaticallytranscript_builder.pl
DT934656Inferred_automaticallytranscript_builder.pl
DR406684Inferred_automaticallytranscript_builder.pl
DY526342Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14146_CRE27471_171-230_0.861_22_B
GPL14146_CRE27471_318-377_0.947_2_C
GPL14146_CRE27471_364-423_0.967_1_A
RNASeq_FPKMWBls:0000004195.605From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
218.23From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
WBls:0000024 (54)
WBls:000002719.8682From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
335.205From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
382.918From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
400.106From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
WBls:0000038276.338From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
306.719From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
8.8017From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:0000041102.258From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
128.225From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
32.965From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
41.9375From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
45.1214From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
73.8375From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
WBls:0000063368.83From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
384.558From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
392.233From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
452.85From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
453.119From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
688.168From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
696.286From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
720.489From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
925.273From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
950.817From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
Methodcurated