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WormBase Tree Display for CDS: CRE28146

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Name Class

CRE28146SMapS_parentSequenceCrem_Contig4
StructureSource_exons1478
522605
7952130
21722275
23052500
25462744
DB_infoDatabaseTREEFAMTREEFAM_IDTF300364
DB_remarkCRE-GLH-1 protein; contains similarity to Pfam domains PF00098 (Zinc knuckle), PF00270 (DEAD/DEAH box helicase), PF00271 (Helicase conserved C-terminal domain); contains similarity to Interpro domains IPR011545 (DEAD/DEAH box helicase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001878 (Zinc finger, CCHC-type), IPR001650 (Helicase, C-terminal domain-like), IPR036875 (Zinc finger, CCHC-type superfamily), IPR014001 (Helicase superfamily 1/2, ATP-binding domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis remanei
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00056273
Corresponding_transcriptCRE28146.1
Corresponding_proteinRP30439
Corresponding_oligo_setGPL14146_CRE28146_2141-2200_0.944_1_C
GPL14146_CRE28146_2235-2294_0.934_2_B
GPL14146_CRE28146_2309-2368_0.872_34_A
Matching_cDNADY528629Inferred_automaticallytranscript_builder.pl
DY528865Inferred_automaticallytranscript_builder.pl
DR779967Inferred_automaticallytranscript_builder.pl
DY526464Inferred_automaticallytranscript_builder.pl
DR407611Inferred_automaticallytranscript_builder.pl
DY525768Inferred_automaticallytranscript_builder.pl
DR781811Inferred_automaticallytranscript_builder.pl
DY525759Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14146_CRE28146_2141-2200_0.944_1_C
GPL14146_CRE28146_2235-2294_0.934_2_B
GPL14146_CRE28146_2309-2368_0.872_34_A
RNASeq_FPKMWBls:0000004199.945From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
205.588From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
WBls:0000024 (54)
WBls:000002710.3628From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
26.7134From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
28.3523From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
30.0315From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
WBls:0000038102.678From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
112.242From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
41.6963From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:0000041172.548From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
172.916From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
208.649From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
354.664From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
387.525From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
511.833From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
WBls:0000063105.386From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
112.426From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
116.489From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
128.802From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
190.34From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
208.098From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
208.584From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
224.556From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
224.942From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
82.139From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
Methodcurated