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WormBase Tree Display for CDS: CRE29522

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Name Class

CRE29522SMapS_parentSequenceCrem_Contig9
StructureSource_exons1369
415714
7621193
12401542
15841796
18482237
22852546
25912901
29473122
31753544
DB_infoDatabaseTREEFAMTREEFAM_IDTF300601
DB_remarkCRE-NATH-10 protein; contains similarity to Pfam domains PF05127 (Helicase), PF08351 (tRNA(Met) cytidine acetyltransferase TmcA, N-terminal), PF13718 (GNAT acetyltransferase 2), PF13725 (Possible tRNA binding domain); contains similarity to Interpro domains IPR013562 (tRNA(Met) cytidine acetyltransferase TmcA, N-terminal), IPR007807 (Helicase domain), IPR027992 (Possible tRNA binding domain), IPR000182 (GNAT domain), IPR016181 (Acyl-CoA N-acyltransferase), IPR032672 (TmcA/NAT10/Kre33)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis remanei
PropertiesCodingCDS
Prediction_statusPredicted
VisibleGeneWBGene00060044
Corresponding_transcriptCRE29522.1
Corresponding_proteinRP03532
Corresponding_oligo_setGPL14146_CRE29522_2484-2543_0.890_11_A
GPL14146_CRE29522_2640-2699_0.896_8_C
GPL14146_CRE29522_2919-2978_0.929_4_B
Microarray_resultsGPL14146_CRE29522_2484-2543_0.890_11_A
GPL14146_CRE29522_2640-2699_0.896_8_C
GPL14146_CRE29522_2919-2978_0.929_4_B
RNASeq_FPKMWBls:000000432.636From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
34.2254From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
WBls:0000024 (54)
WBls:00000273.47803From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
35.051From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
43.7984From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
44.425From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
WBls:000003818.6941From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
21.3074From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
8.80446From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:000004115.1807From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
15.5332From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
16.0295From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
26.5003From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
31.8287From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
34.0417From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
WBls:000006314.2628From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
14.4969From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
16.2987From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
16.9316From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
18.9501From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
24.8226From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
27.457From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
28.9686From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
29.017From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
31.4343From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
Methodcurated