Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CRE29746

expand all nodes | collapse all nodes | view schema

Name Class

CRE29746SMapS_parentSequenceCrem_Contig9
StructureSource_exons199
194445
10691365
14541567
DB_infoDatabaseTREEFAMTREEFAM_IDTF106212
DB_remarkCRE-PAS-4 protein; contains similarity to Pfam domains PF00227 (Proteasome subunit), PF10584 (Proteasome subunit A N-terminal signature); contains similarity to Interpro domains IPR001353 (Proteasome, subunit alpha/beta), IPR037560 (), IPR029055 (Nucleophile aminohydrolases, N-terminal), IPR000426 (Proteasome alpha-subunit, N-terminal domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis remanei
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00060022
Corresponding_transcriptCRE29746.1
Corresponding_proteinRP24800
Corresponding_oligo_setGPL14146_CRE29746_503-562_0.959_1_B
GPL14146_CRE29746_576-635_0.945_4_C
GPL14146_CRE29746_663-722_0.738_90_A
Matching_cDNADT933791Inferred_automaticallytranscript_builder.pl
DR778878Inferred_automaticallytranscript_builder.pl
DY525738Inferred_automaticallytranscript_builder.pl
DT934703Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14146_CRE29746_503-562_0.959_1_B
GPL14146_CRE29746_576-635_0.945_4_C
GPL14146_CRE29746_663-722_0.738_90_A
RNASeq_FPKMWBls:0000004332.161From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
337.236From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
WBls:0000024 (54)
WBls:0000027208.636From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
236.521From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
245.075From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
62.9879From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:0000038236.622From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
240.719From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
56.7514From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:0000041248.531From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
255.488From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
264.697From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
425.658From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
440.125From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
480.216From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
WBls:0000063139.703From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
142.3From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
149.153From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
153.958From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
157.833From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
158.33From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
159.359From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
191.823From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
193.842From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
197.347From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
Methodcurated