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WormBase Tree Display for CDS: CRE29778

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Name Class

CRE29778SMapS_parentSequenceCrem_Contig9
StructureSource_exons (11)
DB_infoDatabaseTREEFAMTREEFAM_IDTF300549
DB_remarkCRE-FASN-1 protein; contains similarity to Pfam domains PF00107 (Zinc-binding dehydrogenase), PF00109 (Beta-ketoacyl synthase, N-terminal domain), PF00550 (Phosphopantetheine attachment site), PF00698 (Acyl transferase domain), PF00975 (Thioesterase domain), PF02801 (Beta-ketoacyl synthase, C-terminal domain), PF08659 (KR domain), PF14765 (Polyketide synthase dehydratase N-terminal domain), PF16197 (Ketoacyl-synthetase C-terminal extension); contains similarity to Interpro domains IPR020841 (Polyketide synthase, beta-ketoacyl synthase domain), IPR011032 (GroES-like superfamily), IPR036736 (ACP-like superfamily), IPR013968 (Polyketide synthase, ketoreductase domain), IPR032821 (Polyketide synthase, C-terminal extension), IPR029058 (Alpha/Beta hydrolase fold), IPR014031 (Beta-ketoacyl synthase, C-terminal), IPR036291 (NAD(P)-binding domain superfamily), IPR014043 (Acyl transferase), IPR023102 (), IPR009081 (Phosphopantetheine binding ACP domain), IPR001031 (Thioesterase), IPR016035 (Acyl transferase/acyl hydrolase/lysophospholipase), IPR020807 (Polyketide synthase, dehydratase domain), IPR013149 (Alcohol dehydrogenase-like, C-terminal), IPR020843 (Polyketide synthase, enoylreductase domain), IPR016036 (Malonyl-CoA ACP transacylase, ACP-binding), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase superfamily), IPR014030 (Beta-ketoacyl synthase, N-terminal), IPR020801 (), IPR016039 (Thiolase-like), IPR020806 (Polyketide synthase, phosphopantetheine-binding domain), IPR001227 (Acyl transferase domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis remanei
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00059961
Corresponding_transcriptCRE29778.1
Corresponding_proteinRP37939
Corresponding_oligo_setGPL14146_CRE29778_7207-7266_0.805_71_C
GPL14146_CRE29778_7414-7473_0.810_60_B
GPL14146_CRE29778_7576-7635_0.958_1_A
Matching_cDNADR776467Inferred_automaticallytranscript_builder.pl
DT936748Inferred_automaticallytranscript_builder.pl
DT935707Inferred_automaticallytranscript_builder.pl
DR409697Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14146_CRE29778_7207-7266_0.805_71_C
GPL14146_CRE29778_7414-7473_0.810_60_B
GPL14146_CRE29778_7576-7635_0.958_1_A
RNASeq_FPKMWBls:000000429.4799From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
31.5055From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (54)
WBls:0000027388.611From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
403.06From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
405.718From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
76.3823From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:000003851.1142From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
68.6624From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
69.0311From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
WBls:000004113.6092From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
14.1013From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
17.0498From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
21.9181From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
25.4524From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
29.5136From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
WBls:000006326.7787From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
28.0067From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
29.7962From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
29.8138From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
30.261From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
56.6932From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
58.5995From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
59.5757From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
62.0095From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
64.8847From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
Methodcurated