WormBase Tree Display for CDS: D2092.3
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| D2092.3 | Evidence | Inferred_automatically | make_isoforms.pl | ||
|---|---|---|---|---|---|
| SMap | S_parent | Sequence | D2092 | ||
| Structure | Source_exons | 1 | 106 | ||
| 154 | 287 | ||||
| 493 | 608 | ||||
| 928 | 1142 | ||||
| 1203 | 1358 | ||||
| 1880 | 1972 | ||||
| 2040 | 2126 | ||||
| 2685 | 2922 | ||||
| 2968 | 3208 | ||||
| DB_info | Database | TrEMBL | UniProtAcc | P91197 | |
| UniProt | UniProtAcc | P91197 | |||
| UniProt_GCRP | UniProtAcc | P91197 | |||
| AlphaFold | entry | P91197 | |||
| NCBI_protein | GI_number | GI:351060756 | |||
| Protein_id | CHROMOSOME_I | CCD68494 | 1 | ||
| DB_remark | ACR-11 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR038050 (Neuronal acetylcholine receptor), IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR002394 (Nicotinic acetylcholine receptor), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain) | ||||
| Origin | From_laboratory | RW | |||
| Species | Caenorhabditis elegans | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Visible | Gene | WBGene00000050 | |||
| Corresponding_transcript | D2092.3.1 | ||||
| Corresponding_protein | CE09102 | ||||
| Corresponding_PCR_product | cenix:159-f8 | ||||
| mv_D2092.3 | |||||
| sjj_D2092.3 | |||||
| Corresponding_oligo_set (17) | |||||
| Matching_cDNA | L1_Nanopore_Li_129909 | Inferred_automatically | transcript_builder.pl | ||
| YA_Nanopore_Li_37001 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_216107 | Inferred_automatically | transcript_builder.pl | |||
| elegans_PE_SS_GG1726|c0_g2_i2 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_43209 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_35816 | Inferred_automatically | transcript_builder.pl | |||
| RNAi_result | WBRNAi00043516 | ||||
| WBRNAi00102757 | |||||
| WBRNAi00113432 | |||||
| WBRNAi00003293 | |||||
| WBRNAi00066390 | |||||
| Microarray_results (18) | |||||
| Brief_identification | Acetylcholine receptor subunit acr-11 | Curator_confirmed | WBPerson1983 | ||
| RNASeq_FPKM (74) | |||||
| Method | curated |
