WormBase Tree Display for CDS: F22B5.9
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| F22B5.9 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F22B5 | |||
| Structure | Source_exons | 1 | 58 | |||
| 195 | 250 | |||||
| 294 | 1331 | |||||
| 1377 | 1845 | |||||
| 1897 | 1965 | |||||
| 2012 | 2097 | |||||
| DB_info | Database | KEGG | KEGG_id | 6.1.1.20 | ||
| SwissProt | UniProtAcc | Q19713 | ||||
| UniProt | UniProtAcc | Q19713 | ||||
| UniProt_GCRP | UniProtAcc | Q19713 | ||||
| AlphaFold | entry | Q19713 | ||||
| NCBI_protein | GI_number | GI:3876233 | ||||
| TREEFAM | TREEFAM_ID | TF105681 | ||||
| Protein_id | CHROMOSOME_II | CAA90360 | 1 | |||
| DB_remark | FARS-3 protein; contains similarity to Pfam domains PF03483 (B3/4 domain), PF03484 (tRNA synthetase B5 domain), PF17759 (Phenylalanyl tRNA synthetase beta chain CLM domain), PF18262 (Phe-tRNA synthetase beta subunit B1 domain); contains similarity to Interpro domains IPR020825 (Phenylalanyl-tRNA synthetase-like, B3/B4), IPR004531 (Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archaeal/eukaryotic type), IPR045864 (Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)), IPR041616 (Phenylalanyl tRNA synthetase beta chain, core domain), IPR005146 (B3/B4 tRNA-binding domain), IPR040659 (Phenylalanine--tRNA ligase beta subunit, B1 domain), IPR009061 (Putative DNA-binding domain superfamily), IPR005147 (tRNA synthetase, B5-domain), IPR045060 (Phenylalanine-tRNA ligase, class IIc, beta subunit) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00001498 | ||||
| Corresponding_transcript | F22B5.9.1 | |||||
| Corresponding_protein | CE20708 | |||||
| Corresponding_PCR_product | cenix:19-b12 | |||||
| mv_F22B5.9 | ||||||
| sjj_F22B5.9 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA (83) | ||||||
| RNAi_result | WBRNAi00096893 | |||||
| WBRNAi00045283 | ||||||
| WBRNAi00064949 | ||||||
| WBRNAi00008684 | ||||||
| WBRNAi00096954 | ||||||
| WBRNAi00095577 | ||||||
| WBRNAi00064366 | ||||||
| WBRNAi00093117 | ||||||
| WBRNAi00025176 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Phenylalanine--tRNA ligase beta subunit | Accession_evidence | UniProt | SP:Q19713 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf006772 | |||||
| WBsf015406 | ||||||
| Method | curated |
