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WormBase Tree Display for CDS: OVOC13394

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Name Class

OVOC13394SMapS_parentSequenceOVOC_OM1b_7
StructureSource_exons128
149255
390509
717950
12981486
DB_infoDB_remarkcontains similarity to Pfam domains PF03834 (Binding domain of DNA repair protein Ercc1 (rad10/Swi10)), PF12826 (Helix-hairpin-helix motif); contains similarity to Interpro domains IPR011335 (Restriction endonuclease type II-like), IPR010994 (RuvA domain 2-like), IPR004579 (ERCC1/RAD10/SWI10 family), IPR041663 (DisA/LigA, helix-hairpin-helix motif)
OriginFrom_laboratoryMBM
SpeciesOnchocerca volvulus
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00255401
Corresponding_transcriptOVOC13394.1
OVOC13394.2
Corresponding_proteinOVP13307
Matching_cDNAovolvulus_GG629|c203_g1_i2Inferred_automaticallytranscript_builder.pl
ovolvulus_GG629|c203_g1_i5Inferred_automaticallytranscript_builder.pl
Brief_identificationDNA excision repair protein ERCC-1 homologPerson_evidenceWBPerson2973
RNASeq_FPKMWBls:0000104 (15)
WBls:00001079.2276From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010813.3392From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
14.4909From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
9.94841From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
WBls:000066419.9363From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
20.3526From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
Remark[140306 es9] Gene model OVOC551 has been split into this, OVOC13394 and OVOC13395 based on SL1, RNA-Seq and protein evidence data.Curator_confirmedWBPerson2062
Methodcurated