WormBase Tree Display for CDS: OVOC13394
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OVOC13394 | SMap | S_parent | Sequence | OVOC_OM1b_7 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 28 | |||
149 | 255 | |||||
390 | 509 | |||||
717 | 950 | |||||
1298 | 1486 | |||||
DB_info | DB_remark | contains similarity to Pfam domains PF03834 (Binding domain of DNA repair protein Ercc1 (rad10/Swi10)), PF12826 (Helix-hairpin-helix motif); contains similarity to Interpro domains IPR011335 (Restriction endonuclease type II-like), IPR010994 (RuvA domain 2-like), IPR004579 (ERCC1/RAD10/SWI10 family), IPR041663 (DisA/LigA, helix-hairpin-helix motif) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00255401 | ||||
Corresponding_transcript | OVOC13394.1 | |||||
OVOC13394.2 | ||||||
Corresponding_protein | OVP13307 | |||||
Matching_cDNA | ovolvulus_GG629|c203_g1_i2 | Inferred_automatically | transcript_builder.pl | |||
ovolvulus_GG629|c203_g1_i5 | Inferred_automatically | transcript_builder.pl | ||||
Brief_identification | DNA excision repair protein ERCC-1 homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 9.2276 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 13.3392 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | |||
14.4909 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
9.94841 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
WBls:0000664 | 19.9363 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
20.3526 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Remark | [140306 es9] Gene model OVOC551 has been split into this, OVOC13394 and OVOC13395 based on SL1, RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |