WormBase Tree Display for CDS: OVOC188
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| OVOC188 | SMap | S_parent | Sequence | OVOC_OM1b_7 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (11) | |||||
| DB_info | DB_remark | OVO-EIF-3.E protein; contains similarity to Pfam domains PF01399 (PCI domain), PF09440 (eIF3 subunit 6 N terminal domain); contains similarity to Interpro domains IPR016650 (Eukaryotic translation initiation factor 3 subunit E), IPR036390 (Winged helix DNA-binding domain superfamily), IPR019010 (Eukaryotic translation initiation factor 3 subunit E, N-terminal), IPR000717 (Proteasome component (PCI) domain) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00236997 | ||||
| Corresponding_transcript | OVOC188.1 | |||||
| Corresponding_protein | OVP05684 | |||||
| Matching_cDNA | ovolvulus_GG633|c67_g1_i1 | Inferred_automatically | transcript_builder.pl | |||
| ovolvulus_GG633|c67_g1_i4 | Inferred_automatically | transcript_builder.pl | ||||
| Brief_identification | Eukaryotic translation initiation factor 3 subunit E homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 17.7645 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 22.6735 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 34.187 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 35.6709 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| WBls:0000664 | 45.1516 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 65.3871 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Method | curated |
