WormBase Tree Display for CDS: OVOC197
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| OVOC197 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
| Structure | Source_exons (28) | |||||
| DB_info | DB_remark | contains similarity to Pfam domains PF13246 (Cation transport ATPase (P-type)), PF16209 (Phospholipid-translocating ATPase N-terminal), PF16212 (Phospholipid-translocating P-type ATPase C-terminal); contains similarity to Interpro domains IPR023298 (P-type ATPase, transmembrane domain superfamily), IPR036412 (HAD-like superfamily), IPR008250 (P-type ATPase, A domain superfamily), IPR032630 (P-type ATPase, C-terminal), IPR001757 (P-type ATPase), IPR023299 (P-type ATPase, cytoplasmic domain N), IPR032631 (P-type ATPase, N-terminal), IPR023214 (HAD superfamily), IPR006539 (P-type ATPase, subfamily IV) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00237006 | ||||
| Corresponding_transcript | OVOC197.1 | |||||
| OVOC197.2 | ||||||
| Corresponding_protein | OVP08176 | |||||
| Matching_cDNA | ovolvulus_GG621|c21_g1_i1 | Inferred_automatically | transcript_builder.pl | |||
| ovolvulus_GG621|c21_g1_i11 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG621|c21_g1_i13 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG621|c21_g1_i14 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG621|c21_g1_i16 | Inferred_automatically | transcript_builder.pl | ||||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 0.135249 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 0.132857 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 1.2309 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 1.78857 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| WBls:0000664 | 0.604012 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 0.671391 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Method | curated |
