WormBase Tree Display for CDS: OVOC204
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OVOC204 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
Structure | Source_exons | 1 | 100 | |||
430 | 628 | |||||
751 | 850 | |||||
1069 | 1232 | |||||
1517 | 1775 | |||||
2226 | 2600 | |||||
3100 | 3218 | |||||
3594 | 3747 | |||||
3947 | 4096 | |||||
4463 | 4753 | |||||
DB_info | DB_remark | OVO-SWSN-9 protein; contains similarity to Pfam domains PF00439 (Bromodomain), PF12024 (Domain of unknown function (DUF3512)); contains similarity to Interpro domains IPR001487 (Bromodomain), IPR036427 (Bromodomain-like superfamily), IPR021900 (Protein of unknown function DUF3512) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00237013 | ||||
Corresponding_transcript | OVOC204.1 | |||||
Corresponding_protein | OVP13771 | |||||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 10.4622 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 18.9126 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
21.2188 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
2.87534 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
WBls:0000664 | 13.4889 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
27.2215 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Remark | [140414 es9] Splice sites of OVOC204 gene model corrected using RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |