WormBase Tree Display for CDS: OVOC2305
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OVOC2305 | SMap | S_parent | Sequence | OVOC_OM1b_113 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 81 | |||
546 | 685 | |||||
1073 | 1259 | |||||
1789 | 2058 | |||||
2491 | 2735 | |||||
2936 | 3134 | |||||
DB_info | DB_remark | OVO-IDHB-1 protein; contains similarity to Pfam domain PF00180 (Isocitrate/isopropylmalate dehydrogenase); contains similarity to Interpro domains IPR004434 (Isocitrate dehydrogenase NAD-dependent), IPR024084 (Isopropylmalate dehydrogenase-like domain) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00239114 | ||||
Corresponding_transcript | OVOC2305.1 | |||||
Corresponding_protein | OVP00041 | |||||
Matching_cDNA | ovolvulus_GG550|c88_g1_i4 | Inferred_automatically | transcript_builder.pl | |||
Brief_identification | Putative isocitrate dehydrogenase [NAD] subunit beta, mitochondrial | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 26.5486 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 25.4521 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | |||
27.5926 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
27.7989 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
WBls:0000664 | 50.7394 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
85.0334 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Method | curated |